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Preprints

TET2 regulates early and late transitions in exhausted CD8+T-cell differentiation and limits CAR T-cell function

Dimitri AJ, Baxter AE, Chen GM, Hopkins CR, Rouin GT, Huang H, Kong W, Holliday CH, Wiebking V, Bartoszek R, Drury S, Dalton K, Koucky OM, Chen Z, Giles JR, Jung I, O’Connor R, Collins S, Everett JK, Amses K, Sherrill-Mix S, Chandra A, Goldman N, Vahedi G, Jadlowsky JK, Young RM, Melenhorst JJ, Maude SL, Levine BL, Frey NV, Berger SL, Grupp SA, Porter DL, Herbst F, Porteus MH, Bushman FD, Weber EW, Wherry EJ, Jordan MS, Fraietta JA.
Preprint from
bioRxiv
31 March 2024
PPR
PPR830864
Abstract
CD8 + T-cell exhaustion hampers disease control in cancer and chronic infections and limits efficacy of T-cell−based therapies, such as CAR T-cells. Epigenetic reprogramming of CAR T-cells by targeting TET2, a methylcytosine dioxygenase that mediates active DNA demethylation, has shown therapeutic potential; however, the role of TET2 in exhausted T-cell (T EX ) development is unclear. In CAR T-cell exhaustion models and chronic LCMV infection, TET2 drove the conversion from stem cell-like, self-renewing T EX progenitors towards terminally differentiated and effector (T EFF )-like T EX . In mouse T-cells, TET2 -deficient terminally differentiated T EX retained aspects of T EX progenitor biology, alongside decreased expression of the transcription factor TOX, suggesting that TET2 potentiates terminal exhaustion. TET2 also enforced a T EFF -like terminally differentiated CD8 + T-cell state in the early bifurcation between T EFF and T EX , indicating a broad role for TET2 in mediating the acquisition of an effector biology program that could be exploited therapeutically. Finally, we developed a clinically actionable strategy for TET2- targeted CAR T-cells, using CRISPR/Cas9 editing and site-specific adeno-associated virus transduction to simultaneously knock-in a CAR at the TRAC locus and a functional safety switch within TET2 . Disruption of TET2 with this safety switch in CAR T-cells restrained terminal T EX differentiation in vitro and enhanced anti-tumor responses in vivo . Thus, TET2 regulates pivotal fate transitions in T EX differentiation and can be targeted with a safety mechanism in CAR T-cells for improved tumor control and risk mitigation.

One Sentence Summary

Modulation of exhausted CD8 + T-cell differentiation by targeting TET2 improves therapeutic potential of CAR T-cells in cancer.